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JGraphT is a free Java graph library that provides mathematical graph-theory objects and algorithms. JGraphT supports various types of graphs including: * directed and undirected graphs. * graphs with weighted / unweighted / labeled or any user-defined edges. * various edge multiplicity options, including: simple-graphs, multigraphs, pseudographs. * unmodifiable graphs - allow modules to provide "read-only" access to internal graphs. * listenable graphs - allow external listeners to track modification events. * subgraphs graphs that are auto-updating subgraph views on other graphs. * all compositions of above graphs. Although powerful, JGraphT is designed to be simple. For example, graph vertices can be of any objects. You can create graphs based on: Strings, URLs, XML documents, etc; you can even create graphs of graphs!

http://jgrapht.sourceforge.net/